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Medaka

Male or Female Medaka? How to Tell (and Why It Matters)

By Motoki Totsugi — founder of Tokyo Aqua Garden, keeping aquariums professionally in Tokyo since 2005 · Updated September 2026
A group of white medaka photographed from the side, showing dorsal and anal fins
White medaka. Sexing is done from the side, where the fins show their shape.

Breeding is half the fun of keeping medaka (Japanese rice fish), so you'll want to know which fish are males and which are females. It comes down to two fins and a belly.

Once you can read those cues, you can start sorting, or , by sex, size, and variety. Sorted groups are easier to feed, and you decide which fish breed.

Male vs. Female at a Glance

View the fish from the side, at eye level, and check it against more than one row before you decide.

Where to lookMale (オス)Female (メス)
Dorsal fin A visible notch, or split, at the base of the finNo notch; smooth outline
Anal fin Long and broad, close to a rectangle or parallelogramShorter and slightly rounded, closer to a triangle
Body outlineSlender, with a fairly straight line from head to tailRounded, with a plump belly
Belly in breeding seasonStays slenderSwells further
Activity levelHigher; eager at feeding timeCalmer by comparison
Breeding-season behaviorRoams the whole tank looking for a mate
Size at the same ageOften slightly largerOften slightly smaller

How to Read Each Part

The Notch in the Dorsal Fin (Sebire)

The dorsal fin is the one on the back. A male has a notch at the base of the fin; a female has none.

Anal Fin Shape (Shiribire)

The anal fin sits on the underside, between belly and tail, and the difference here is in size as well as shape. A male's anal fin is long and broad, with a squared-off outline close to a parallelogram. A female's is shorter, slightly rounded, and closer to a triangle.

Body Shape and Belly

Males are slender: seen from the side, the line from head to tail is fairly straight. Females are rounder through the middle, and in breeding season the belly swells further.

Activity and Breeding Behavior

Expect the males to be more active, especially at feeding time, when they eat more eagerly. In breeding season they cruise all over the tank looking for a mate.

When It Is Too Early to Tell

Illustration of a panda medaka, by Satoko NakajimaThese differences become clearer as the fish grows, and young or small medaka are hard to sex. The cues stand out once a fish passes about 0.6 inches (1.5 cm) in body length. If you're raising a batch from eggs, give them time. Among fish of the same age, males also tend to be slightly larger.

Illustration of a kohaku (red and white) medaka in profile, by Satoko Nakajima
A medaka in profile. Illustration by Satoko Nakajima.

Side View for Sex, Top View for Size

Japanese medaka culture has two words for how you look at a fish. is the side view, and it is how you sex a medaka, by checking the fins. is the top view, looking down into a tub or bowl, and it is how breeders judge body shape and size.

A clear container that is narrow front-to-back makes sexing easier, because it keeps the fish turned sideways to you. Background color matters: view light-colored fish against black and dark fish against white, and the fin edges pop. Move fry and young fish with a small, soft, fine-mesh fry net; a black one also makes patterns and head counts easier to see. A net this small struggles with fish over about 0.8 inches (2 cm), so use a separate net for grown fish.

Why Sort Your Medaka?

Sorting means dividing medaka by growth stage, sex, variety, and health so fish in similar condition can be kept and fed together. If your tub keeps filling up with medaka, sort them even if you never plan to breed.

Fair Feeding and Planned Breeding

Fish born in the same batch don't grow at the same speed, and the small ones go hungry next to bigger siblings. Split them up by size and the little ones get enough to eat, and more of them survive. Give each variety its own container to keep the lines from mixing. Separating males from females stops unplanned spawning: you hatch and raise eggs only when you choose to, and the tub doesn't get overcrowded.

Choosing the Parents

With males and females in separate groups, you can pick the individuals with the best body shape, color, and pattern, then pair them deliberately. As you keep sorting, you learn which parents produce which offspring and can steer the line. Breeders developing new medaka varieties work the same way.

Sorting Out Fish That Cannot Thrive

Health is part of sorting too. Fish with clear genetic problems, such as a bent spine or a tendency to swim vertically, should be separated at the fry stage. They don't live long, and they shouldn't share a container with the healthy fish.

A Simple Sorting Routine

Illustration of a marine blue medaka, by Satoko Nakajima
A medaka. Illustration by Satoko Nakajima.
  1. Wait before sexing. Size sorting can start at the fry stage, but hold off on sorting by sex until the fish are past 0.6 inches (1.5 cm).
  2. Sort by size from above. Looking down into the container, separate the clearly larger fish from the rest so the small ones get their share of food.
  3. Sort by sex from the side. Use a narrow container with a contrasting background and check each fish against the table above. If a fish is hard to call, let it grow a little and check again.
  4. Pull out fish with defects. Remove any vertical swimmers or bent-spined fish you missed at the fry stage.
  5. Keep the sexes apart until you choose to breed. When you're ready, pair your best candidates.
About Tokyo Aqua Garden
We are a professional aquarium design & maintenance company based in Tokyo, Japan. Our aquarists install and maintain aquariums for offices, clinics and homes across Tokyo, and we have published more than 3,600 aquarium care articles in Japanese.
Originally published in Japanese on t-aquagarden.com. This English version has been adapted for international readers. Units and product references have been localized for the US.